Hands-On Whole-Brain histology: ABBA & BraiAn Pipeline School - ENGLISH Course Présentiel
Dernière mise à jour : 12/02/2026
Unité de recherche
Description
Aucune description
Objectifs de la formation
By the end of this course, you will be able to:
- Confidently navigate the ABBA workflow
- Organize and load whole-brain datasets, automatic/manual section positioning, atlas reslicing, atlas registration
- Perform automatic signal segmentation with BraiAn and QuPath
- Easily navigate Whole brain data (Allen Brain ontology navigation, data QC, metrics selection)
- Visualize and quantitively analyze and BraiAn whole brain data
We encourage participants to bring images from their own experiments—these can be used during practical sessions to kickstart your own analysis projects.
Public visé
The workshop is intended for young researchers, including Master's and PhD students, as well as postdocs and established scientists who want to sharpen their practical understanding of state-of-the-art histological analysis tools.
Prérequis
Prior experience with brain histology and a basic understanding of Python are recommended, but not strictly required.
Modalités pédagogiques
Language : English.
Moyens et supports pédagogiques
Students will need to bring their computers.
Modalités d'évaluation et de suivi
Ongoing formative assessments throughout the course. A certificate of completion is issued at the end of the training.
Formateurs
CC
CASTOLDI Carlo
Responsable scientifique
PM
PIERONI Maddalena
Responsable scientifique
RL
REQUIE Linda
Responsable scientifique
SB
SILVA Bianca
Responsable scientifique
Informations sur l'admission
Admission to this training programme is not subject to any examination, test or prior selection; registration is confirmed upon receipt of a complete application file and validation by the training provider.
Modalités tarifaires spécifiques
All our training courses are VAT exempt. Enjoy exclusive volume discounts: save 5% when registering 3-4 participants, 10% for 5-6, and 20% for groups of 7 or more. CNRS employees benefit from a special 20% discount.
Informations sur l'accessibilité
Our organisation is committed to ensuring inclusive and equitable access to its training programmes, whether delivered online or in person, for all participants, including people with disabilities. A dedicated accessibility contact is available to assess individual needs and, where possible, implement appropriate pedagogical, technical and organisational adjustments.